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ENSG00000106714: Contactin-associated protein-like 3 Precursor (Homo sapiens)

Cell recognition molecule Caspr3

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Number of protein-coding transcripts corresponding to the submitted sequence identifier: 4
Representative transcript (= transcript with the highest number of ATTTA motifs): ENST00000377653
Total number of distinct positions containing the selected motif WWTATTTATWW: 2
Total number of distinct positions containing the selected motif WWWWATTTAWWWW: 1
Total number of distinct positions containing the selected motif WWATTTAWW: 4
Total number of distinct positions containing the selected motif WWWTATTTATWWW: 1
Total number of distinct positions containing the selected motif ATTTA: 17
Total number of distinct positions containing the selected motif WTATTTATW: 4

Transcript ENST00000377653 (representative transcript)

Length 3' UTR: 1,683 nt
A+T content in 3' UTR: 0.65
RNAplfold output: [ opening energies | probabilities of being unpaired ] (whole transcript)
Download/Linkout:[ download as annotated Genbank file | Linkout to ]
ATTTA: 1.09 fold-enrichment
Site 1791-1795:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.19 kcal/mol (short range) / 0.54 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.74 (short range) / 0.41 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 2013-2017:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.24 kcal/mol (short range) / 0.28 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.68 (short range) / 0.64 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 2234-2238:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.59 kcal/mol (short range) / 0.71 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.38 (short range) / 0.32 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 2426-2430:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.99 kcal/mol (short range) / 1.22 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.20 (short range) / 0.14 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 2653-2657:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.89 kcal/mol (short range) / 1.27 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.23 (short range) / 0.13 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 3118-3122:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.28 kcal/mol (short range) / 0.28 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.64 (short range) / 0.64 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]

3' UTR sequence

Highlight motifs in 3' UTR sequence: all ATTTA | none

Overview conservation analysis

The tree below summarizes the conservation pattern of the detected ARE motifs. Circles indicate genomic MAF alignments, while boxes are used transcript alignments. Signs in grey indicate that the sequence is present in the alignment, but the correpsonding ARE pattern was not detected.