The ViennaRNA Web ServicesThis server provides programs, web services, and databases, related to our work on RNA secondary structures. For general information and other offerings from our group see the main TBI homepage.
Our Web Services
Thermodynamic Structure Prediction
...predicts minimum free energy structures and base pair probabilities from single RNA or DNA sequences.
...predicts minimum free energy structures and base pair probabilities from single RNAs using a guiding potential based on SHAPE reactivity probing data.
...predicts consensus secondary structures from an alignment of several related RNA or DNA sequences. You need to upload an alignment.
...provides a detailed thermodynamic description of a sequence/structure pair.
...allows you to predict the secondary structure of a dimer.
...allows you to predict the accessibility of a target region.
Structure conservation analysis server
...will assist you in detecting evolutionarily conserved RNA secondary structures in multiple sequence alignments.
...will assist you in detecting thermodynamically stable and evolutionarily conserved RNA secondary structures in multiple sequence alignments.
...allows you to predict the reading direction of evolutionarily conserved RNA secondary structures.
...predicts rnpB genes.
Barriers / Treekin Server
...allows you to get insights into RNA folding kinetics.
...allows you to design RNA sequences for any desired target secondary structure.
...assists you in siRNA design.
Genome Wide Screening
...predicts putative targets for sRNA-mRNA interactions in bacteria.
...predicts bacterial Transcription Start Sites from dRNA-seq data.
Other Web Services
...interactively draw and download RNA secondary structures.
...generates structural alignments from a set of sequences. (In collaboration with the Bioinformatics Group Freiburg).
...compares RNA family models.
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